A Philadelphia chart can be coded right for Medicare and still deny at a HealthChoices plan or at CBH. Qualigenix codes each encounter to the payer that will read it, with certified coders and two levels of QA.
Speak with our Medical Coding specialists today.



Qualigenix codes for every payer a Philadelphia practice sees, and Qualigenix medical coding services run inside your existing EHR across 38+ specialties. Coders are certified (CPC and CCS) and matched to your specialty, then trained on the plans your patients carry. Statewide items, such as how Pennsylvania Medical Assistance handles code-level limits, live on our medical coding services in Pennsylvania page. This page covers what changes in Philadelphia County: five physical health plans that each publish their own coding and payment policies, a separate behavioral health plan with its own service rules, and dual-eligible patients whose claims cross from Medicare to Community HealthChoices.
Qualigenix assigns ICD-10-CM, CPT and HCPCS Level II codes for independent Philadelphia practices after reading the full record. Coders check medical necessity against Novitas coverage policies, apply modifiers only where the note supports them, query providers when documentation falls short and run every chart through two levels of QA. Coded encounters export daily to your billing system, and you pay a percentage of collections.
Codes are checked against the Medical Assistance fee schedule, Novitas coverage policies and commercial payer rules before claims go out.
Most Pennsylvania coding denials trace back to one of four gaps: a code that isn't on the Medical Assistance fee schedule, a diagnosis that doesn't meet a Novitas coverage policy, a commercial policy that changed without anyone noticing, or a chart that can't back up the code in an audit. Qualigenix checks for each one before the claim leaves.
Coders read physician notes, results and procedure reports first, then flag gaps or conflicts instead of guessing at intent on a HealthChoices or Medicare chart.
ICD-10-CM, CPT and HCPCS Level II codes are sequenced per CMS and plan rules. Since October 1, 2026, charts use the FY 2027 ICD-10-CM code set.
Modifiers such as 25, 59, 26 and TC go on only when the note backs them, which cuts bundling denials from plan edits through coding denial review.
When a note won't support a defensible code, coders send a non-leading query to the provider and track the response time with a full audit trail.
Every chart gets a peer or auditor review, then statistical sampling scored by coder and specialty to hold accuracy at 98.9%.
HCC coding supports value-based contracts, and prospective and retrospective reviews keep charts ready for a Medicare or Medical Assistance audit.
These are company-wide results across Qualigenix coding clients, not Philadelphia-only figures. Philadelphia practices get the same coders, QA and reporting.

Qualigenix brings a Philadelphia practice onto coding in six steps, with a 6-day average onboarding.
We sign a BAA and SLA, name a coding lead and set scope by encounter type and code set.
Certified coders are matched to your specialties, and chart intake from your EHR is set up securely.
We build a coding playbook with your specialty guidelines plus each HealthChoices plan, CBH and Novitas policy you bill most.
Coders review notes before coding, and the query process, response tracking and audit trail are agreed with your providers.
Codes are assigned and sequenced per CMS and plan rules, then checked by peer review and statistical sampling.
Coded encounters export daily to your billing system, and denial causes feed back into coder training.
CPC and CCS certified coders, coding directly inside your EHR with two-level QA reviews and fast 6-day onboarding.
Your charts go to CPC and CCS certified coders who work your specialty every day, so they know which codes and modifiers your payers question most often.
Every chart is checked twice before it leaves coding: once by a peer or auditor, then by statistical sampling that scores accuracy by coder and specialty.
Qualigenix codes inside 133 EMR and EHR platforms. Your providers keep documenting the way they do now, and coded encounters return to your billing system daily.
Most practices start coding with Qualigenix in about 6 days, with the playbook for Philadelphia plans built during that first week.
Frequently asked questions regarding Pennsylvania Medical Assistance fee schedules, Novitas LCD policies, coder certifications, and coding audits.
No. Coding accuracy depends on knowing your specialty and your payers' policies, not on where coders sit. Qualigenix coders work inside your EHR and code to each HealthChoices plan, CBH, Novitas and commercial policy that applies to your charts. Book a meeting to review a sample of your charts.
Yes. Qualigenix coders hold CPC or CCS certification and are assigned by specialty. Each chart then goes through two levels of QA, a peer or auditor review followed by statistical sampling, which is how coding accuracy holds at 98.9% across client practices.
Coders check each Medicare procedure against the Novitas local coverage determination that applies, confirming the diagnosis code on the chart is one the policy accepts. When the note doesn't support a covered diagnosis, the coder queries the provider instead of choosing a code that isn't documented.
Yes. Behavioral health encounters for HealthChoices members in Philadelphia County go to Community Behavioral Health, and Qualigenix assigns behavioral health coders who code those encounters to CBH's service definitions and authorization rules.
Yes. Qualigenix runs prospective and retrospective coding audits that score accuracy by provider and code family and show where documentation falls short. Audit findings go to your providers as specific chart examples, and the same QA process continues on every chart after the audit.
Qualigenix charges a percentage of collections for coding as part of its revenue cycle work. The exact rate depends on your specialty, chart volume and encounter types. A coding specialist can quote it after a short review of your charts and payer mix.
Qualigenix codes ICD-10-CM/PCS, CPT and HCPCS Level II across professional fee, outpatient, emergency, ambulatory surgery, inpatient and HCC risk adjustment encounters. The scope for your practice is set at kickoff, before the first chart is coded.