Qualigenix bills Medicaid managed care, Medicare and commercial claims for independent Brooklyn practices and works every claim until it's paid.
Speak with our Medical Billing specialists today.



Qualigenix provides medical billing services to independent practices across Brooklyn, from solo primary care offices to multi-provider specialty groups. Statewide filing and payment rules are covered on our medical billing services in New York page. This page covers what changes for a practice in Kings County. The biggest change is the payer mix. New York's July 2026 enrollment report counted 829,432 Brooklyn residents in mainstream Medicaid managed care, more than any other New York City borough. For most Brooklyn practices, that means the plan on the member's card decides the filing window, the portal and the prior authorization rules, so plan routing sits at the center of our billing work. We bill all payers, including Medicaid plans, Medicare Advantage plans, dual-eligible plans and commercial carriers. Qualigenix charges a percentage of collections, so our pay rises only when yours does.
Qualigenix checks eligibility, reviews charges, scrubs and submits claims, posts payments, appeals denials and works aged A/R for Brooklyn practices. We bill every payer: the Medicaid managed care plans that covered 829,432 Brooklyn residents in July 2026, Medicare through New York's Medicare contractor, and commercial carriers. You keep your EHR, and we start billing inside it.
Claims are scrubbed and tracked across all major commercial and government payers in New york.
Qualigenix bills every Medicaid managed care plan open to Kings County members and confirms plan assignment before each visit, because a claim sent to the wrong plan can burn days of a short filing window.
The state's managed care directory lists Healthfirst, Anthem Blue Cross and Blue Shield HP, EmblemHealth, MetroPlus Health and Molina Healthcare for Medicaid in Kings County, along with special needs plans from Amida Care and MetroPlus. Fidelis Care and UnitedHealthcare also enroll New York City Medicaid members. Healthfirst is the largest, with 925,252 mainstream Medicaid members across the city in July 2026. Each plan has its own payer ID, claim address and timely filing rule set by your contract. Qualigenix stores those rules per plan and per provider, checks the member's plan on the date of service, and sends the claim to the plan that holds the member that day.
Most Kings County Medicaid plans also run Health and Recovery Plans (HARP) for adults with significant behavioral health needs and Child Health Plus for children. These products sit under the same plan name but bill under different rules and benefit sets. Qualigenix reads the product on the eligibility response, not just the plan name, so a HARP claim isn't billed like a mainstream Medicaid claim.
Members not enrolled in a plan are billed to fee-for-service Medicaid through eMedNY, which expects most claims within 90 days of the date of service. Late claims need a documented delay reason. The full workflow is on our New York Medicaid billing rules page.
These are company-wide figures across Qualigenix client practices, not Brooklyn-only results.

Qualigenix moves a New York practice to full billing in six steps, with a 6-day average onboarding time.
Kickoff call, signed BAA and access to your existing EHR and clearinghouse. You don't change software.
We verify each provider's enrollment with Medicare, Medicaid and every Kings County plan you bill, then set up payer accounts.
A specialty coder is assigned and plan-specific scrub rules are loaded.
EDI, ERA and EFT routing is set up and tested with a live transaction.
A validation batch runs through pre-claim checks before full volume.
We go live and work your legacy A/R in parallel, so old claims don't age out during the switch.
Independent clinics and specialty practices in Brooklyn trust Qualigenix for dedicated claim support.
Each Brooklyn account gets coders who work in its specialty and a dedicated biller who knows its payer mix, including which Kings County plans it's contracted with.
We bill inside your current system. Qualigenix works across 133 EMR and EHR platforms, so there's no migration and no new software for your staff.
Every month you get collections, denial rate, days in A/R and payer-level detail, with each metric defined so you can check our math.
Most practices go live in about six days, with legacy A/R worked in parallel so cash keeps coming in during the switch.
Frequently asked questions about our setup and support in Brooklyn.
Qualigenix bills for independent Brooklyn practices across 38+ specialties and every payer, including Medicaid plans, Medicare and commercial carriers. When you compare vendors, ask for clean-claim rate, denial rate and days in A/R in writing. Our billing specialists can walk you through ours.
Yes. Qualigenix bills Healthfirst, MetroPlus Health, EmblemHealth, Anthem HP, Molina, Fidelis Care, UnitedHealthcare and the special needs plans that serve Kings County. We confirm the member's plan and product before each visit so claims reach the right plan.
We load each plan's filing window from your contracts, track every claim by date of service and work any claim that hasn't been acknowledged within days. Fee-for-service Medicaid claims are held to eMedNY's 90-day rule.
National Government Services processes Traditional Medicare Part A and Part B claims for New York as the Jurisdiction K contractor. Qualigenix bills NGS directly and bills Medicare Advantage and dual-eligible plans separately under their own rules.
Qualigenix charges a percentage of collections, so our fee depends on your specialty, volume and payer mix. A billing specialist can price your practice after reviewing a sample of your claims.
No. A billing company needs to know the plans, filing windows and portals your claims run through, and work inside your EHR. Qualigenix bills Kings County's Medicaid plans, Medicare and commercial payers every day for practices like yours.
Yes. Qualigenix signs a Business Associate Agreement with every practice, limits system access to assigned staff and handles patient data under HIPAA rules. Ask our team for a copy of our BAA before you sign.